Carbohydrate databases

Glycosciences.de	DKFZ-Heidelberg	Structures, NMR, MS, X-ray, References
KEGG-Glycan	KEGG Kyoto Encyclopedia of Genes and Genomes	Structures, Refences, Pathways
CFG-Glycan Database	Consortium Functional Glycomics	Structures, References, Occurence
GlycoSuite	Proteome Systems Ltd	Structures, References, Occurence, Disease
Bacterial Carbohydrate Structure DataBase	N.D. Zelinsky Institute of Organic Chemistry	structural, bibliographic and related information on bacterial carbohydrate structures
E.coli O-antigen Database	University of Stockholm

 

Releated carbohydrate information in gene or protein databases

CAZy	Architecture et Fonction des Macromolécules Biologi- ques (AFMB), Marseille	Carbohydrate active enzymes
GGDB	AIST	Human glycogenes
KEGG Orthology	KEGG Kyoto Encyclopedia of Genes and Genomes	Glycosyltransferases
KEGG Pathway	KEGG Kyoto Encyclopedia of Genes and Genomes	Carbohydrate Metabolism
GPI Anchor Biosynthesis Report	Research Institute of Molecular Pathology	Enzymes for GPI anchor biosynthesis
Glycosylation Pathways	Consortium Functional Glycomics
NC-IUBMB		Glycosyltransferases
SphinGOMAP		Pathways of sphingolipid biosynthesis
BRENDA	University of Cologne	Enzymes functional data
ExPaSY ENZYME		Enzyme nomenclature DB
Lectines	CNRS-CERMAV, Grenoble	3D structures of Lectins
LectinDB	INDIAN INST. OF SCIENCE	Plant Lectines
CancerLectinDB	INDIAN INST. OF SCIENCE	Lectins in Cancer
CTDL	Imperial College London	Animal lectines
PDB2LINUCS	DKFZ-Heidelberg	Online Acess to carbohydrate relate information in PDB
DOUGAL	Birkbeck College, London	DB Of Glycoprotein Structures
Glycoconjugate DB	Hokaido University	Glycan Struktures contained in the PDB
GlycoEpitope DB	Kawasaki laboratory	Antibodies for GlycoEpitopes
CFG-GBP-DB	Consortium Functional Glycomics	Glycan Binding Protein
CFG- Microarray Data	Consortium Functional Glycomics	Glyco-gene Chip
Pathogen Sugar-Binding Database	The MITRE Corporation	carbohydrate sequences to which pathogenic organisms specifically adhere
GlycoPep DB		A glycopeptide database

 

Prediction / analysis of glycosylation positions in proteins

GlySeq	DKFZ-Heidelberg	Analysis of Glycoprotein Sequences
NetNGlyc	Center for Biological Sequence Analysis	N-Glycosylation
NetOGlyc	Center for Biological Sequence Analysis	O-Glycosylation
YinOYang	Center for Biological Sequence Analysis	Glyco-, Phosphorylation
big-PIPredictor	Research Institute of Molecular Pathology	GPI- anchor prediction
DGPI		GPI- anchor prediction
GlyProt	DKFZ-Heidelberg	In Silico Glycoylation

 

Tools for glycan structure analysis

Glyco-Peakfinder	EUROCarbDB	annotation of glycan MS spectra
GlycoWorkbench	EUROCarbDB	structure determination from mass spectrometry data
Glycofragment	DKFZ-Heidelberg	Masses from glycan fragments
GlycoSearchMS	DKFZ-Heidelberg	comparison of MS-spectra
GlycoMod	Proteome Systems	Glycan compistion from MolPeak
GlycoMass	Proteome Systems	Masses from compositions
CCRC	CCRC	Fragments Partially Methylated Alditol Acetate
CASPER	University of Stockholm	1H,13C-NMR estimation
SugarBase	Bijvoet Center	1H,13C-NMR search
NMR-Search	DKFZ-Heidelberg	1H,13C-NMR search
CCRC	CCRC	Xyloglucan NMR DB
Elution Coord. DB	Nagoya NT Group, Japan	HPLC
GALAXY		Glycoanalysis by the three axes of MS and chromatography
GlycoBase	UOC/NIBRT	HPLC
RINGS	Soka University	Resources of informatics for glycomes at soka

 

Graphical representations and nomenclature

GlycanBuilder	EUROCarbDB	Visual editor of glycan structures
LINUCS	DKFZ-Heidelberg	Linear encoding of sugars
LiGraph	DKFZ-Heidelberg	Graphical representation
IUPAC		Nomenclature
CabosML	Mitsui Knowledge Industry	carbohydrate sequence markup language
GLYDE	University of Georgia	GLYcan Data Exchange Standard
CFG		Symbolic Nomenclature for Glycans
MonoSaccharideDB	DKFZ-Heidelberg	Systematic names for monosaccharides

 

3D structures

SWEET II	DKFZ-Heidelberg	Generation of 3D structure
GLYCAM	CCRS	Building of carbohydrate structures for MD simulations using AMBER
Disaccharides	CERMAV	Conformational maps
GlycoMapsDB	DKFZ-Heidelberg	Conformational maps
GlyVicinity	DKFZ-Heidelberg	Analysis of Protein-Carbohydrate Interactions
GlyTorsion	DKFZ-Heidelberg	Analysis of Carbohydrate Torsion Angles found in PDB
CARP	DKFZ-Heidelberg	CArbohydrate Ramachandran Plot
pdb-care	DKFZ-Heidelberg	PDB CArbohydrate REsidue check
Dynamic Molecules	DKFZ-Heidelberg	Molecular dynamics of glycans